MmuALTD0003579-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026616 | Cr2
Description
complement receptor 2 [Source:MGI Symbol;Acc:MGI:88489]
Coordinates
chr1:195136811-195141283:-
Coord C1 exon
chr1:195141179-195141283
Coord A exon
NA
Coord C2 exon
chr1:195136811-195139798
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTTGGT
5' ss Score
2.11
3' ss Seq
TCTTTTTTTGTTGCCTGCAGATC
3' ss Score
12.43
Exon sequences
Seq C1 exon
CAATTATTATACAAAGACAAGACCCAAAGAAGGAGCTCTTCATTTAGAAACACGAGAAGTATATTCTATTGATCCATATAACCCAGCAAGCTGATGACATGACAA
Seq A exon
NA
Seq C2 exon
ATCAAGATGTAGAACTCTCAGCTACCTCTTCAGCACCATATCTGCTTACATGCCACCAAGCTACCCTCCACGACAATAATGGACTAAACCTCTGATTTGTAAGCCAGCCCCAATTAAATGTTTTTCTCTATAAGAGTTGTCAAAGTTATGGTGTCTCTTCACAGCAATAGAAACCCAAAATAAGACAGAAGTTGAAACTAGGGACTGGGGTATTGTTGTGATAGACCTGACCATGCTTTTGTTTGGAGACATGTGGACTTTGGGTTTGGAAAGCAGTGGAATGCTTTAAGCACAGTTTAATAGACCACCCTAGAAGGAGCACAGAAGACAATGATGTTTAGGGTGATTTGAACTATGAGGGCCTGGTTCAAGAGGTTTCAGATAAGAAGAACTTTAGTATGTGGCCTACAGATTGTTCTTGTGATATTTCAGAGAAGGTAGTGGCTGCTCTCTGCTCTTGTCAAAAAAAAAAAAAAAAAAATTGCCCATGGCTAAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026616-35-49,36-49-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGCAAGCTGATGACATG
R:
AGGGTAGCTTGGTGGCATGTA
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types