MmuALTD0003589-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000025532 | Crcp
Description
calcitonin gene-related peptide-receptor component protein [Source:MGI Symbol;Acc:MGI:1100818]
Coordinates
chr5:130505177-130510818:+
Coord C1 exon
chr5:130505177-130505277
Coord A exon
chr5:130505278-130505364
Coord C2 exon
chr5:130510782-130510818
Length
87 bp
Sequences
Splice sites
5' ss Seq
CGGGTGGGC
5' ss Score
5.01
3' ss Seq
GGCTCTCTGTTCTTTTGTAGGAA
3' ss Score
10.62
Exon sequences
Seq C1 exon
TTGCGGCACACACACGGAACCGGTGAGCAGAGCAGCGCCGGCGCAACGTGAGACTCTTCTCACGGCGGTTGCGTACGCTGAGGCAGAGGCAACATGGAAGT
Seq A exon
GTAAGCGACACGACCAGGGGAAGCCAGGATCATCTGGGGACCGCGAAGCGGCCGGCGGCTAGACCTCGGGACCCGCGAGCAGGACGG
Seq C2 exon
GAAGGATGCGAACGCAGCACTGCTCAGCAACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025532-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0387411=RNA_pol_Rpb4=PU(4.3=38.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCACACACACGGAACC
R:
CTCATAGTTGCTGAGCAGTGCT
Band lengths:
135-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: