MmuALTD0003669-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128072219-128077714:+
Coord C1 exon
chr4:128072219-128072326
Coord A exon
NA
Coord C2 exon
chr4:128077545-128077714
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TATTCTAATTGTCGTTCCAGCGG
3' ss Score
6.84
Exon sequences
Seq C1 exon
GGGCGACACCCTGACCTTTTCCTGCTTCCCCGGGTACCGTCTGGAGGGCACGGCCCGCATCACGTGCCTGGGGGGCAGACGGCGCCTGTGGAGCTCGCCTCTGCCAAG
Seq A exon
NA
Seq C2 exon
CGGAGTGTGGGAACTCAGTCACAGGCACTCAGGGCACTTTGCTGTCCCCCAACTTTCCTGTGAACTACAATAACAACCACGAGTGTATCTACTCCATCCAGACCCAGCCGGGGAAGGGGATTCAGCTTAAAGCCAAGGCATTTGAGCTCGCTGAAGGAGACCTCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-21-22,22-22-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(50.9=94.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCGTCTGGAGGGCAC
R:
GAGTGCCTGTGACTGAGTTCC
Band lengths:
106-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: