MmuALTD0003835-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000061740 | Cyp2d22
Description
cytochrome P450, family 2, subfamily d, polypeptide 22 [Source:MGI Symbol;Acc:MGI:1929474]
Coordinates
chr15:82206223-82210608:-
Coord C1 exon
chr15:82210508-82210608
Coord A exon
chr15:82210502-82210507
Coord C2 exon
chr15:82206223-82206471
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
3' ss Seq
TTGTTATTCCTTCGTCCTAGGTA
3' ss Score
9.66
Exon sequences
Seq C1 exon
TCCTCCTGAGTTGCCCTTTTTCCTCGAGCTCCTACTCCTCCTGTTCCTGCGAGGCTCCAGACACCTCTTGCCTCTCCTCGGCTGAGTTTCAGAACGCACCG
Seq A exon
GTAAAG
Seq C2 exon
GTAGCTGGAGTTAGGATTGAGAAGTGTTTCCAAAGAAACCCAAAGAGCAGCCGGGCAGCCATGAGACTGCCGACCGGGGCTGAACTGTGGCCCATAGCCATATTCACGGTCATCTTCCTGATTCTGGTGAACCTGATGCACTGGCGCCAGCGCTGGACTGCCCACTACCCTCCAGGCCCTATGCCGTGGCCTGTGCTTGGGAACCTGCTGCACATGGACTTCCAGAATATGCCAGCAGGCTTCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061740-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(5.6=41.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACCTCTTGCCTCTCCTC
R:
CGGCTGCTCTTTGGGTTTCTT
Band lengths:
96-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: