MmuALTD0003838-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000075517 | Cyp2d37-ps
Description
cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene [Source:MGI Symbol;Acc:MGI:3721937]
Coordinates
chr15:82520192-82520653:-
Coord C1 exon
chr15:82520512-82520653
Coord A exon
chr15:82520405-82520511
Coord C2 exon
chr15:82520192-82520292
Length
107 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
ATGGGAAAATGTCCTTCCAGGCC
3' ss Score
4.74
Exon sequences
Seq C1 exon
GCAAAGGGAAACCCTGAGAGTAGCTTCAATGATGCAAATCTATGTCTGGTTGTCCTTGACCTGCTGGGTGCTGCAACTGTGACCACCTCAACCACACTGTCCTGGGCCCTGCTGCTTATGATCCTGCATCCGGATGTGCAGT
Seq A exon
GTGAGCCTGGCTGGGGCTGTCAAGAAAGGAGGAGGAGGGTAGAGGCAAACTCCTTAAACTTACTTGGGACACTTGTAGATCCCAGCATTGAGTTAACCCAGACTGCA
Seq C2 exon
GCCAAGTACAACAGGAAATCGATGAGGTCATTTGGTATGTGTGGCTTCCAGAGATGGCAGACCAGGTCTGCATGCCCTTCACCAATGCTGTCATTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075517-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(59.8=59.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACCCTGAGAGTAGCTTCA
R:
CATGAATGACAGCATTGGTGAAGG
Band lengths:
235-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: