MmuALTD0003877-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000013539 | Tango2
Description
transport and golgi organization 2 [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18300825-18343902:-
Coord C1 exon
chr16:18343895-18343902
Coord A exon
NA
Coord C2 exon
chr16:18300825-18324450
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TTGTTCTCCTTTTCCCACAGACC
3' ss Score
12.63
Exon sequences
Seq C1 exon
CGGAGGCG
Seq A exon
NA
Seq C2 exon
ACCTTGTGACCGTGTGAGCAAAGCCACCCTTGCAACCCATGTGCATCATCTTCTTTAAGTTTGATCCTCGTCCTGTTTCCAAAAATGCATACAGGTAATGAATGCCCTTGTTCTGCCTCCGCCAGGCTGCTCCAGGCCTGAGGTCCACGGCTGTTCCTCACCCCTGGGGTGCCATATATGCAGGAGACAATGGCAGGCTGCTGGGTGTGTGTCCTCTGAGTAACTGAGTCTTGACTTCTGGTTGCCTGGAGACATCCTGTACAAGCCTGGTCCGGCTGTCTTGGACAGTGTCTGCTTAGCATGGGGTGCTGGGAGGAGCCCACCCTAGAGCAAGGGCTCAGAGCTAATGTGCAGGTGTGGCGAGACAGAGGGATGAGGCGAAGTTCTGTGGCCTGTGATTAGGGTCACATCTGCAGAGCTGGAGTAGTGGTGACAGAGAGGGGCGCTGCTGGGTTGGGTTGGGTGAGGTGTCTGGCTGGTGGCAGATTGAGGAAAGCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539-1-9,2-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF057427=NRDE=PU(11.9=94.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types