MmuALTD0003990-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:71055852-71056598:+
Coord C1 exon
chr2:71055852-71055916
Coord A exon
chr2:71055917-71056119
Coord C2 exon
chr2:71056495-71056598
Length
203 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACG
5' ss Score
7.66
3' ss Seq
AAATTCTTTGTGTCTTTCAGGAG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GTCGCTACCTCTTGATCTCTGCCCCGAGTCCCCAGCGCGGGGTCCCGCGTCAGCCTTCCTTTGAG
Seq A exon
GTTCGCAGGTGGCGGCTGCCACCCCTCGCGGAAGTGAGGGGCGCGCCCCTCCTGGGCCCTGCGGACCCCTAGTCTCCATGGGCCGGACCCGGAAGGCCAATGTGTGCCGCAGGCTGAGTCGCCGGGCTCTGGGCTTCTATGCACGCGACGCAGGCGTGGTGCAGAGGACGAACCTGGGCATCCTGCGGGCGCTGGTGTGCCAG
Seq C2 exon
GAGAGTACTAAATTTAAGAATGTTTGGACAACTCATTCCAAGTCACCTATAGCCTATGAGAGAGGAAGAATATATTTTGACAATTACCGGTGCTGTGTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966-1-6,2-6,3-6-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACCTCTTGATCTCTGCC
R:
CTGACACAGCACCGGTAATTGT
Band lengths:
164-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types