MmuALTD0004267-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9613593-9615071:+
Coord C1 exon
chr13:9613593-9613702
Coord A exon
chr13:9613703-9613714
Coord C2 exon
chr13:9614991-9615071
Length
12 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
ATATCCTTGTATCATTCCAGTTC
3' ss Score
7.53
Exon sequences
Seq C1 exon
AAATTGGCCCTGCCTCAGTGATGGTGGGAAATCTAGTATCTGGGAAGAGGATTGCCCAGGCTAGCGGCAGAGACCTGGGTCAGATAGAGGACAATGACCAGGCCCGGAAG
Seq A exon
GTGAGAACCGAG
Seq C2 exon
TTCCTGTTCCTCTCAGAGGTCTTACAGTGGAGAGCACAGACCACTCCTGACCATCTGCTGTACACTCTGCTCAACTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-27-32,28-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(4.0=70.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAGACCTGGGTCAGATA
R:
TCAGGAGTGGTCTGTGCTCTC
Band lengths:
95-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: