MmuALTD0004301-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000041911 | Dlx1
Description
distal-less homeobox 1 [Source:MGI Symbol;Acc:MGI:94901]
Coordinates
chr2:71529107-71530065:+
Coord C1 exon
chr2:71529107-71529198
Coord A exon
NA
Coord C2 exon
chr2:71529628-71530065
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
CTCCGCGCGCTCTGTTGCAGAGG
3' ss Score
8.24
Exon sequences
Seq C1 exon
ACCCGTGCAGCCTCGAGCTGGAGTGGCCAGCTGGGCCTGGAGAGATGCGAGCAAGCCCCTGGGAACGGTGGCAACGGCGGGGCGGCGGCCGA
Seq A exon
NA
Seq C2 exon
AGGAGCCCCGGCCGGGACGTGTGGACCGGATTCTCCCCAGGCCGGGCCGCGTCGCCCGCTCTAGTCCAGCCGAGCCCGAGCTTCTCGGACCAATCCCCGGTGATTATGCAAGAGAGCCGACCAATCAGCTCCACCAGCTCATGAATATTTATGACCTTGGCTGAGTCAAAGCTTTGAACCGAGTTTGGGGAGCTCGGCAGCATCATGCTTAGACTTTTCAAAGAGACAAACTCCATTTTCTTATGAATGGAAAGTGAAAACCCCTGTTCCGCTTAAATTGGGTTCCTTCCTGTCCTGAGAAACATAGAGACCCCCAAAAGGGAAGCAGAGGAGAGAAAGACCCACACCCAGACCCCGCGAGAAGAGATGACCATGACCACCATGCCAGAAAGTCTCAACAGCCCCGTGTCGGGCAAGGCTGTGTTTATGGAGTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041911-2-3,3-3,4-3-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAGATGCGAGCAAGC
R:
GGAGAATCCGGTCCACACGTC
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types