MmuALTD0004319-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000041144 | Dnah7b
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46182341-46187367:+
Coord C1 exon
chr1:46182341-46182391
Coord A exon
chr1:46182392-46182481
Coord C2 exon
chr1:46187155-46187367
Length
90 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TTCTACCTTATTTTTCTCAGGCC
3' ss Score
7.71
Exon sequences
Seq C1 exon
GTGATTGGAGATGCAATTGCTGCCTATACCAAAAATTCACGAATTAGTTGG
Seq A exon
GTAAGAGATTGGCCTGGACAGACTGTTCTCTGTGTATCTCAAACCTTTTGGACAGTAGAAGTCCAAACTGCTATACCTAAGGGGCATAGG
Seq C2 exon
GCCCTTGAAGGCTACTTGGCAAAATGCAACCATCAAATTGATGATATTGTCACATTGGTTCGTGGCAAATTGTCCAAGCAGAACCGTGTTACTCTGGGAGCCCTTGTGGTACTGGATGTTCACGCTAGAGATGTGCTTGCCAGCCTTGTAGATAAAAAGATCAGTGATGACTCGGACTTCCAGTGGTTAAGTCAGCTTAGATACTACTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-31-34,32-34-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(2.2=19.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTGGAGATGCAATTGCTG
R:
ACATCCAGTACCACAAGGGCT
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types