MmuALTD0004320-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30838790-30841796:+
Coord C1 exon
chr17:30838790-30838891
Coord A exon
NA
Coord C2 exon
chr17:30841600-30841796
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
TTGGAAACATCTGCTTTCAGGGT
3' ss Score
4.98
Exon sequences
Seq C1 exon
GTGATGGTTCCCAGCCTGGATGACATTCAGCAAGCCATCAATCGCATGATCCAGTTGACCCTGGAGGTCAGCAGAGGAGTTGCCCACTGGGGACAGCAGCAG
Seq A exon
NA
Seq C2 exon
GGTCTTTTGAAGAAACCATCCCAGCCAGGAAGCTGAAGAACTTCTATCCTGGCGTGGCAGAGCACAAGGATATCTCCAAGCTGGTGCTCCTCCTGTCCTCCTCTGTGAATTCTCTCCGGAAGGCGGCCACTGAGGCCCTGCAGGACTTTCAGAAGTACAAGACTCTCTGGATCGAAGACCGCCACGTGAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-29-26,30-26-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGCCATCAATCGCATGA
R:
CACAGAGGAGGACAGGAGGAG
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: