MmuALTD0004600-1/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000078580 | E430018J23Rik
Description
RIKEN cDNA E430018J23 gene [Source:MGI Symbol;Acc:MGI:2141981]
Coordinates
chr7:134536515-134536904:-
Coord C1 exon
chr7:134536804-134536904
Coord A exon
NA
Coord C2 exon
chr7:134536515-134536628
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATG
5' ss Score
4.44
3' ss Seq
TTTGCTATCTTTCCCTCCAGAAG
3' ss Score
10.61
Exon sequences
Seq C1 exon
TCCTTAAGCCTGGGACTGTGAGCTTCGCGGACGTGGCCGTGTACTTCTCCCCGGAGGAGTGGAGGTGTCTGCGGCCGGCGCAGAGAACCCTGTACCGAGAG
Seq A exon
NA
Seq C2 exon
AAGTCGGGGGCGACAAACCAGCGCTCATCTGCTGGGTGGAGGAAGAGTCCGAAGTGTGGGGACCCGGTGCCCAGGAGCCAGAGGTGGCCATGTGCAGGACAGAAGTCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078580-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.456
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(93.1=55.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCCTGGGACTGTGAGCTT
R:
AGATGAGCGCTGGTTTGTCG
Band lengths:
127-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: