MmuALTD0004699-3/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26592147-26592684:+
Coord C1 exon
chr2:26592147-26592241
Coord A exon
chr2:26592242-26592249
Coord C2 exon
chr2:26592418-26592684
Length
8 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTCC
5' ss Score
3.16
3' ss Seq
TTTTTCCTCTCCTGCCCTAGGCT
3' ss Score
11.06
Exon sequences
Seq C1 exon
CAGCCTGGCCTCTCGGTCCACAGAGCATGGGCTACAAGATCCTGGCAGCCTGCTGGCCCATTCCTTCCAGCAGCTGGACCGAATTGATTCACTGA
Seq A exon
GTGAGCAG
Seq C2 exon
GCTCCTGCAAAAAAGATCTGTGATAACCTCTCACCACCCAGGCTGGATAGAGCAGTCATCCCTAGATCCCTTGTAGCCAGAGTTCAGGCGCTGTCTGGTGGTGCCTATGAGCAGAAGGCCCTGCCTCATTGTCCCTCTTTCTTAGGAGGTTCCTAGGACTTGGGCATGGGGAGTGGGGTCTTGTGTGACTCTTCAGTGGGGCTCCCTGTCTAAGTGGTAAGGTGGGGATTGTCTCCATCTTTGTCATAATAAAGCTGAGACTTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921-30-37,31-37,32-37,33-37-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAAGATCCTGGCAGCCTG
R:
GCCTGGGTGGTGAGAGGTTAT
Band lengths:
107-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types