Special

MmuALTD0005417-1/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000030811 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:MGI Symbol;Acc:MGI:3039600]
Coordinates
chr7:134894379-134896035:+
Coord C1 exon
chr7:134894379-134894411
Coord A exon
NA
Coord C2 exon
chr7:134895524-134896035
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCTCACCTGTCTCTTTGCAGAAA
3' ss Score
12.14
Exon sequences
Seq C1 exon
GTGAAAGGAGGCCGAGAGAGGCACTTGAAGAAG
Seq A exon
NA
Seq C2 exon
AAACCAAAGCCACCTATAGCTTCTGCTGAGGGCCCGGCAGTGCCATCTCCATCACCACAGAGGGAGAAACTGGAGCGTTTCAAGCGCATGTGCCAGCTGCTGGAGCGGGTGCCCGATACCTCTTCTTCCTCCTCGGACTCGGACTCGGATTCAGACTCATCCGGCACATCACTCAGTGAGGATGAAGCTCCTGGAGAGGCCCGGAATGGGCGGCGGCCAGCACGGGGCAGCTCCGGCGAGAAGGAGAACCGTGGGGGACGGCGGGCTATACGCCCTGGCACTGGGGGGCCACTGCTCAGCTGGCCCCTGGGCCCTGCCCCACCACCACGGCCTCCACAGTTGGAGCGACATGTCGTGCGGCCCCCGCCTCGAAGCCCTGAGCCTGATACTCTGCCTTTGGCTGCTGGATCCGACCACCCTCTGCCTCGGGCTGCCTGGCTTCGTGTTTTCCAGCACCTTGGACCCCGTGAGCTATGTGTCTGCATGAGAGTTTGCCGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030811-12-5,13-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=NA C2=0.807
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0064628=F-box=PU(70.5=18.1)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000101884





     
                   









    
Main Skipping Isoform:
ENSMUSP00000033081





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000033081f2772A
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr16:30939788-30939820 
ALTERNATIVE
HsaALTD0002496-1/3
(FBXL19)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr25:27326171-27326203 
ALTERNATIVE
BtaALTD0008486-1/3
(FBXL19)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTGAAAGGAGGCCGAGAGAGG

				
R: 
CCATTCCGGGCCTCTCCA

				
Band lengths: 
242-371

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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