MmuALTD0005490-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000003420 | Fcgrt
Description
Fc receptor, IgG, alpha chain transporter [Source:MGI Symbol;Acc:MGI:103017]
Coordinates
chr7:45101910-45102593:-
Coord C1 exon
chr7:45102414-45102593
Coord A exon
NA
Coord C2 exon
chr7:45101910-45102185
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTCAGA
5' ss Score
3.59
3' ss Seq
GCCTGCGTGTTGGCATCTAGGGA
3' ss Score
6.83
Exon sequences
Seq C1 exon
GCTGGTTGGGTCCTCAGCAGTATCTGACCTACAACAGCCTGCGGCAGGAAGCTGACCCCTGTGGGGCCTGGATGTGGGAAAATCAGGTGTCTTGGTATTGGGAGAAGGAGACCACAGACCTCAAAAGCAAAGAACAGCTCTTCTTGGAGGCCCTCAAGACCCTGGAGAAGATATTAAATG
Seq A exon
NA
Seq C2 exon
GGACCTACACACTGCAGGGCCTGCTGGGCTGTGAACTGGCCTCGGATAATTCCTCAGTGCCCACGGCTGTGTTTGCCCTCAATGGTGAGGAGTTTATGAAATTCAACCCAAGAATCGGCAATTGGACTGGGGAGTGGCCTGAGACGGAAATCGTTGCTAATCTGTGGATGAAGCAGCCTGATGCGGCCAGGAAGGAGAGCGAGTTCCTGCTAAACTCTTGTCCGGAGCGACTGCTAGGCCACCTGGAGAGGGGCCGACGGAACCTGGAGTGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003420-7-6,8-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(48.9=97.7)
A:
NA
C2:
PF0012913=MHC_I=PD(50.6=94.6)
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGCTCTTCTTGGAGGCC
R:
TATCCGAGGCCAGTTCACAGC
Band lengths:
97-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types