MmuALTD0005766-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000000420 | Galnt1
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:MGI Symbol;Acc:MGI:894693]
Coordinates
chr18:24364460-24391154:+
Coord C1 exon
chr18:24364460-24364581
Coord A exon
NA
Coord C2 exon
chr18:24391100-24391154
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GGACATTTATTTTTCAACAGATG
3' ss Score
7.16
Exon sequences
Seq C1 exon
AGAGGCCGAGGAGGCGGCGCGGCGGACTGCGGCCCGAGAGGAGCGCCCGCGCTGCGGCCCGCGGGAGCGCGCCGCCACCGCCCGCGCCGGCCTGAGGAGCGCCTGCCGCCGCGCGGGCCGAG
Seq A exon
NA
Seq C2 exon
ATGATTTGAGACATGTGGATTTGTGATATGAATTCATTTGGAAAGCCACTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000420-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: