MmuALTD0005766-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000000420 | Galnt1
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:MGI Symbol;Acc:MGI:894693]
Coordinates
chr18:24205959-24232653:+
Coord C1 exon
chr18:24205959-24206080
Coord A exon
NA
Coord C2 exon
chr18:24232599-24232653
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GGACATTTATTTTTCAACAGATG
3' ss Score
7.16
Exon sequences
Seq C1 exon
AGAGGCCGAGGAGGCGGCGCGGCGGACTGCGGCCCGAGAGGAGCGCCCGCGCTGCGGCCCGCGGGAGCGCGCCGCCACCGCCCGCGCCGGCCTGAGGAGCGCCTGCCGCCGCGCGGGCCGAG
Seq A exon
NA
Seq C2 exon
ATGATTTGAGACATGTGGATTTGTGATATGAATTCATTTGGAAAGCCACTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000420-1-6,2-6,3-6-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types