MmuALTD0006007-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000078496 | Gm13152
Description
predicted gene 13152 [Source:MGI Symbol;Acc:MGI:3701121]
Coordinates
chr4:146866560-146881749:+
Coord C1 exon
chr4:146866560-146866660
Coord A exon
NA
Coord C2 exon
chr4:146881695-146881749
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TCAATCTTTGTTCTTCACAGAGA
3' ss Score
9.1
Exon sequences
Seq C1 exon
AGACTAGTGCCTAGTGTTTGCGGAACCTGAAAACTTCCTTAAGCTGCAGTTGCTGTGCTGGCCTCCTAGGATATTCAGCAGCTGGTCCTGTCACCTGCCAG
Seq A exon
NA
Seq C2 exon
AGACCCTGGGAGAAGGACAACAAGAATGAGTGTGTTTCTGGTAAATACACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078496-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCTAGTGTTTGCGGAAC
R:
TTGTTGTCCTTCTCCCAGGGT
Band lengths:
119-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: