MmuALTD0006028-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000035829 | Ppp1r26
Description
protein phosphatase 1, regulatory subunit 26 [Source:MGI Symbol;Acc:MGI:2685193]
Coordinates
chr2:28446796-28447982:+
Coord C1 exon
chr2:28446796-28446896
Coord A exon
NA
Coord C2 exon
chr2:28447885-28447982
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TGAAGTTCATGGTTCTCCAGAGT
3' ss Score
3.77
Exon sequences
Seq C1 exon
GTCCGGCCGGGCCGCGCGCCTCCCCCGGAACTCGGCCGTGCCATTCCCATGATGCCCAGCCACCGGGCACGGCTTCCGGAGCGCGGTCGCCGCCGCCGCGG
Seq A exon
NA
Seq C2 exon
AGTGACAGCTCCCAAGATTGACCAGGTAGCTGGACCAACAACCATTAAGACTGTCAGAGGAGCTCAGTTCTGGGTCCATCGTTATAAGCTGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035829-0-1,2-1,3-1,4-1-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGCCATTCCCATGATG
R:
TGCTCACAGCTTATAACGATGGAC
Band lengths:
164-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types