MmuALTD0006386-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000022487 | Gtsf1
Description
gametocyte specific factor 1 [Source:MGI Symbol;Acc:MGI:1921424]
Coordinates
chr15:103428340-103430244:-
Coord C1 exon
chr15:103430203-103430244
Coord A exon
NA
Coord C2 exon
chr15:103428340-103428384
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTACCT
5' ss Score
4.11
3' ss Seq
AACCATGCTTTTTCCTCTAGCAC
3' ss Score
7.89
Exon sequences
Seq C1 exon
ACAACAGCTGCGTCGGCCATCGTCTGCTCGACGGGCTGCCTG
Seq A exon
NA
Seq C2 exon
CACTTGAACAGGACTCCTTTGCCATCAGCATGGAAGACACTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022487-1-9,2-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.252
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTCGGCCATCGTCT
R:
TGTAAGTGTCTTCCATGCTGATG
Band lengths:
80-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types