MmuALTD0006447-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000030606 | Hapln3
Description
hyaluronan and proteoglycan link protein 3 [Source:MGI Symbol;Acc:MGI:1914916]
Coordinates
chr7:86262735-86266901:-
Coord C1 exon
chr7:86266533-86266901
Coord A exon
NA
Coord C2 exon
chr7:86262735-86263037
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
CTTCCTTTCTTCTTTTATAGGTG
3' ss Score
13.86
Exon sequences
Seq C1 exon
GCCTATTCAATGGCGTGAAGTTAGTGGTGGAGACGACGGAGGAGTCCCTGTTCAGTCACCAAGGAGCCAGCGTGACCCTGCCCTGCCACTACCACTATGAGCCAGCCCTGGCATCCCCAAGACATGTGCGTGTTAAGTGGTGGAAGTTGTCAGAGAATGGAGCCCCAGAACAGGACGTGCTGGTGGTCATCGGGCAGAGGCACCGCTCCTTTGGGGACTACCAAGGGCGAGTTCAACTGAGACAGGACAAGCAGCAGGAAGTCTCGCTGGAGCTTCGAGACCTGCGGCTGGAGGACTCTGGGCGCTACCGCTGCGAGGTCATCGATGGCCTGGAAGATGAGAGTGGCCTGGTAGAGCTGGAGCTTCGGG
Seq A exon
NA
Seq C2 exon
GTGTGGTTTTTCCCTACCAGTCCCGCGAAGGGCGCTACCAGCTCAACTTCCACGAGGCCCAACAGGCCTGCCAGGAGCAGGGTGCTATGGTAGCCACTTTTGAGCAGCTTTTCCGAGCCTGGGAGGAAGGCCTAGACTGGTGCAATGCAGGCTGGCTGCAGGATGCCTCCGTGCAGTACCCAATAGTGCTGCCCCGGCAGCCCTGTGGAGGCCTGGGTCTGGCACCTGGTGTTCGCAGCTATGGCCAGCGCCACCACCGCCTGCATCGTTATGATGTGTTCTGCTTTGCTGCTGCCCTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030606-4-3,5-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=92.7),PF0019312=Xlink=PU(0.1=0.0)
A:
NA
C2:
PF0019312=Xlink=WD(100=94.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGTTCAACTGAGACAGG
R:
GCGGGACTGGTAGGGAAAAAC
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: