MmuALTD0006629-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000021366 | Hivep1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:MGI Symbol;Acc:MGI:96100]
Coordinates
chr13:42147359-42150911:+
Coord C1 exon
chr13:42147359-42147459
Coord A exon
NA
Coord C2 exon
chr13:42150769-42150911
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TTTTATCTTTTTCTTTGCAGCAT
3' ss Score
11.27
Exon sequences
Seq C1 exon
CGGGGATCCCCTGCTGCCCCGCCCACGCGCGGGGGGAAGCCGCCGACCTTCGCCCTGGCCGCCCTCGCGCTGCCAGCCGTCCTCACGGACACCCGGGAGAG
Seq A exon
NA
Seq C2 exon
CATGTGGATTAACTGATGGCCAACGAGTACATGGAGCCAGCCTTTTGTAACCTGCTCTTCCAACAGTTTCTAAGAAGAAAAGGGAGCTCTTAAATCTAAGAAAATGCCTCGCACGAAGCAGATTCATCCCAGAAATCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021366-1-0,2-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: