MmuALTD0006687-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000046434 | Hnrnpa1
Description
heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
Coordinates
chr15:103073353-103074211:+
Coord C1 exon
chr15:103073353-103073511
Coord A exon
chr15:103073512-103073515
Coord C2 exon
chr15:103074056-103074211
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTATCC
5' ss Score
5.06
3' ss Seq
AGAGGCTTTTCCTTTTCTAGGAA
3' ss Score
9.49
Exon sequences
Seq C1 exon
GTGGTTATGGAGGAGGCAGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAGGAGGCGGAGGCGGCTTTGGCGGTGGTAGTG
Seq A exon
GTAG
Seq C2 exon
GAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCCAATTTTGGGCCGATGAAGGGAGGAAACTTTGGAGGCAGGAGCTCTGGCCCTTATGGTGGTGGAGGCCAGTACTTTGCTAAACCACGGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046434-13-16,14-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.817 A=NA C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116273=HnRNPA1=WD(100=67.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGTGGCAGCTATGACA
R:
TGTAGCTTCCACCACCTCCAA
Band lengths:
95-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: