MmuALTD0006696-3/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75500947-75503358:+
Coord C1 exon
chr2:75500947-75500955
Coord A exon
chr2:75500956-75500982
Coord C2 exon
chr2:75503291-75503358
Length
27 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTGTTATGTGTTATTTCCAGGTG
3' ss Score
11.22
Exon sequences
Seq C1 exon
GTGGTGATG
Seq A exon
GTGGATATAATGGATTTGGAGGTGATG
Seq C2 exon
GTGGCTATGGATCTGGAGGTGGAAGTGGTGGATATGGTAGCAGAAGGTTTTAAAATAAAACAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005-13-18,14-18,15-18-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=NA C2=0.710
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116273=HnRNPA1=PD(2.6=5.6)
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: