MmuALTD0007162-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000039236 | Isg20
Description
interferon-stimulated protein [Source:MGI Symbol;Acc:MGI:1928895]
Coordinates
chr7:78913981-78914574:+
Coord C1 exon
chr7:78913981-78914042
Coord A exon
NA
Coord C2 exon
chr7:78914322-78914574
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCACCTCCCCATCCTCCAGGGC
3' ss Score
10.16
Exon sequences
Seq C1 exon
TGACTGAAGTAGCCGAGAAGTGGAAACAGAGGGGCAGAAGAGAACCCAGGGCACTGAGACAG
Seq A exon
NA
Seq C2 exon
GGCTTTCTGAGGGTCGCCAAGGAGCATGGCAGGCATCCCAGAGGTGGTGGCCATGGACTGTGAGATGGTGGGGCTTGGGCCTCAAAGGGTGAGTGGCCTCGCCCGCTGCAGCATTGTGAACATCCATGGCGCAGTCCTGTATGACAAGTACATCCGACCCGAGGGAGAGATCACGGACTACAGAACCCAAGTCAGCGGGGTCACGCCTCAGCACATGGTGAGGGCCACGCCATTTGGTGAAGCCAGGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039236-1-4,2-4,3-4-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.013
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(43.9=89.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGGGGCAGAAGAGAACC
R:
CATCTCACAGTCCATGGCCAC
Band lengths:
104-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types