MmuALTD0007198-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000025348 | Itga7
Description
integrin alpha 7 [Source:MGI Symbol;Acc:MGI:102700]
Coordinates
chr10:128383343-128384047:+
Coord C1 exon
chr10:128383343-128383458
Coord A exon
chr10:128383459-128383681
Coord C2 exon
chr10:128383855-128384047
Length
223 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
AGTTGGGTTCCGTCTTCCAGGGA
3' ss Score
7.85
Exon sequences
Seq C1 exon
ATCCACTTTCTGAAGCAAGGCTGCGGTGAAGATAAGATCTGTCAGAGCAACCTCCAGCTCGAGCGGTACCAGTTCTGTTCCAGGATCAGCGACACAGAGTTCCAGGCTCTGCCCAT
Seq A exon
GTAAGAAGGATGGAGAGGGCGTTTGTAGAGGAGGAGAGGGGAGGGGCCAGGGTTCAGAGTGGTCAGGCAGAGGCCCTGACCCGGAAGAGATAATGATTCTCCTAGTCTGGATAATGCCTTGTGTTTTGTGGACACTTTGTTACACTCCTTTGTGAGGCAGGGCTGGCTGGCTCGGTGTTAAGAACTGGGAGCAGAGGCCCAGAGATCTTGCTGTTTACACAAG
Seq C2 exon
GGATCTGGATGGAAGGACCGCCCTGTTCGCATTGAGTGGGCAGCCGTTCATAGGCCTGGAACTGACAGTCACCAACCTGCCCTCTGACCCTGCCCGGCCTCAGGCAGATGGGGATGATGCTCATGAAGCACAGCTCTTGGTCACTCTCCCAGCCTCTCTACGGTACTCAGGAGTCCGTGCTCTGGACTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025348-16-16,17-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(7.7=100)
A:
NA
C2:
PF084417=Integrin_alpha2=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTTTCTGAAGCAAGGCTG
R:
AGAGCACGGACTCCTGAGTAC
Band lengths:
298-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: