MmuALTD0007214-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026971 | Itgb6
Description
integrin beta 6 [Source:MGI Symbol;Acc:MGI:96615]
Coordinates
chr2:60673402-60673693:-
Coord C1 exon
chr2:60673670-60673693
Coord A exon
chr2:60673598-60673669
Coord C2 exon
chr2:60673402-60673477
Length
72 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TTTTTAATCTGTCTGCACAGTGA
3' ss Score
7.9
Exon sequences
Seq C1 exon
AGCTTTTCTGCTTTGCCTGTCCAG
Seq A exon
GTAGCTTCTGTTTTCATTTTAGTCTTAGTGAAAGGTTTTGAATTTACAGCTCAAGTTACTTTTCAAAGCAGT
Seq C2 exon
TGAAAACTGAACCGAATGGGGATTGAGCTGGTCTGCCTGTTTCTGCTACTTCTAGGAAGGAATGATCACGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026971-11-12,12-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTCTGCTTTGCCTGTCC
R:
TGGACGTGATCATTCCTTCCT
Band lengths:
97-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types