MmuALTD0007327-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000058248 | Kcnh1
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:MGI Symbol;Acc:MGI:1341721]
Coordinates
chr1:194100580-194161711:+
Coord C1 exon
chr1:194100580-194100972
Coord A exon
chr1:194100973-194101053
Coord C2 exon
chr1:194161282-194161711
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
CTGTGTCCATCCCCTTTCAGGGC
3' ss Score
12.84
Exon sequences
Seq C1 exon
GTCCTGCAGCTGGGTTCAGACATCCTTCCCCAGTACAAGCAAGAGGCGCCAAAGACACCCCCTCACATCATCCTACACTACTGTGTCTTTAAGACCACGTGGGATTGGATCATCTTGATCCTGACCTTCTACACAGCCATCTTGGTCCCTTACAACGTCTCCTTTAAAACCAGGCAGAATAATGTGGCCTGGCTGGTGGTGGACAGCATCGTGGATGTCATCTTTTTGGTGGACATTGTTTTGAATTTTCACACCACCTTTGTCGGGCCAGCGGGGGAAGTGATATCTGACCCCAAACTTATCCGCATGAACTACCTGAAGACGTGGTTTGTGATCGACCTTCTGTCCTGTTTGCCGTATGACGTCATCAACGCTTTTGAGAACGTGGATGAG
Seq A exon
GTTAGTGCCTTTATGGGTGATCCAGGGAAGATTGGTTTTGCTGATCAGATCCCACCACCACTGGAGGGGAGAGAGAGTCAG
Seq C2 exon
GGCATCAGCAGCCTGTTCAGTTCTCTGAAAGTTGTGCGGCTGCTCCGTCTCGGGCGAGTGGCCCGCAAACTGGATCATTACATCGAGTATGGAGCCGCGGTACTGGTCCTGTTGGTGTGCGTGTTTGGGCTTGCTGCCCACTGGATGGCCTGCATCTGGTACAGCATTGGGGACTATGAGATCTTTGATGAAGACACCAAGACCATCCGCAACAACAGCTGGCTCTACCAACTGGCATTGGACATCGGCACTCCATACCAGTTTAATGGGTCTGGTTCAGGGAAGTGGGAAGGTGGGCCAAGCAAGAACTCTGTCTACATCTCCTCGCTGTACTTCACCATGACAAGTCTCACCAGTGTGGGCTTTGGTAACATTGCCCCATCCACAGACATCGAGAAGATCTTCGCAGTGGCCATCATGATGATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058248-5-5,6-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.5=49.6)
A:
NA
C2:
PF0052026=Ion_trans=FE(57.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGTTTGCCGTATGACGT
R:
GCACACCAACAGGACCAGTAC
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: