MmuALTD0007352-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29484615-29484860:-
Coord C1 exon
chr6:29484811-29484860
Coord A exon
chr6:29484789-29484810
Coord C2 exon
chr6:29484615-29484716
Length
22 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TCCCCCTCCCCCTTTTCCAGGTG
3' ss Score
13.24
Exon sequences
Seq C1 exon
TGCTGTTGGGAACCGTGGCTGTGAGGCTGCTGCAGGGCAGGACAGTCATG
Seq A exon
GTGAGCTAAGGACCCAGGGAAG
Seq C2 exon
GTGGACCAGCACACAGTGACCTTGCCCTTCCTCCGGGAGCCACTGCTGTACATTGAGCTTCGTGGTCACACTGTGATCCTGCATGCCCAGCCTGGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-47-69,48-69-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(24.7=100)
A:
NA
C2:
PF0009420=VWD=PD(9.8=57.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGGCAGGACAGTCAT
R:
GCATGCAGGATCACAGTGTGA
Band lengths:
106-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types