MmuALTD0007421-2/4 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25659770-25667242:+
Coord C1 exon
chr12:25659770-25659870
Coord A exon
chr12:25659871-25659927
Coord C2 exon
chr12:25667102-25667242
Length
57 bp
Sequences
Splice sites
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
3' ss Seq
TATCTGACTTGTTTTTACAGGTG
3' ss Score
11
Exon sequences
Seq C1 exon
ACACGACCACGTGACCTGTCAGTTCCTGACTCCTAGGAAGATGGCCGCCGGGCGTGGTGCGGGCATAGCTGTGTGCTCTTGGCGTCTTGTCCTCTGACAAG
Seq A exon
GTCTGCGGCGCTGTTCTGCAGAGCTGAGGGCGCCGTCTTCGGCCAGGCCGTGACACG
Seq C2 exon
GTGAATTAAAGTCGGCTATAGATTTCTGTGAAAATGTCGGTTCTTATATCACAGAGTGTGATAAATTATGTGGAAGAAGAGAATATTCCTGCTCTGAAAGCCCTTCTTGAGAAGTGCAAAGATGTAGATGAGAGGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333-0-0,2-0,3-0,4-0-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127962=Ank_2=PU(29.0=75.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCGTCTTGTCCTCTGAC
R:
CTTCTCAAGAAGGGCTTTCAGAGC
Band lengths:
138-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: