MmuALTD0007421-2/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:24974905-24982377:+
Coord C1 exon
chr12:24974905-24975005
Coord A exon
chr12:24975006-24975062
Coord C2 exon
chr12:24982237-24982377
Length
57 bp
Sequences
Splice sites
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
3' ss Seq
TATCTGACTTGTTTTTACAGGTG
3' ss Score
11
Exon sequences
Seq C1 exon
ACACGACCACGTGACCTGTCAGTTCCTGACTCCTAGGAAGATGGCCGCCGGGCGTGGTGCGGGCATAGCTGTGTGCTCTTGGCGTCTTGTCCTCTGACAAG
Seq A exon
GTCTGCGGCGCTGTTCTGCAGAGCTGAGGGCGCCGTCTTCGGCCAGGCCGTGACACG
Seq C2 exon
GTGAATTAAAGTCGGCTATAGATTTCTGTGAAAATGTCGGTTCTTATATCACAGAGTGTGATAAATTATGTGGAAGAAGAGAATATTCCTGCTCTGAAAGCCCTTCTTGAGAAGTGCAAAGATGTAGATGAGAGGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333-5-3,6-3,7-3,8-3,9-3-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127962=Ank_2=PU(29.0=75.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCGTCTTGTCCTCTGAC
R:
CTTCTCAAGAAGGGCTTTCAGAGC
Band lengths:
138-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types