MmuALTD0007635-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000002900 | Lamb1
Description
laminin B1 [Source:MGI Symbol;Acc:MGI:96743]
Coordinates
chr12:31950345-31951731:+
Coord C1 exon
chr12:31950345-31950444
Coord A exon
chr12:31950445-31950466
Coord C2 exon
chr12:31951556-31951731
Length
22 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACT
5' ss Score
6.43
3' ss Seq
GTTGCTTTTCTTTTCTGTAGCCC
3' ss Score
8.35
Exon sequences
Seq C1 exon
AAAGGAAGACCCGAAGAAAAGACAGGCAGCTTGCCTGCTGCGTCCTCCTTCCCGTGCCGCGTCCCCTCGTCTGCGAGGACTGGACATGGGGCTGCTCCAG
Seq A exon
GTGTTCGCCTTTGGTGTCCTAG
Seq C2 exon
CCCTATGGGGCACCCGAGTGTGCGCTCAGGAACCGGAGTTCAGCTATGGCTGCGCAGAAGGCAGCTGCTACCCTGCCACTGGCGACCTTCTCATCGGCCGAGCGCAAAAGCTCTCCGTGACTTCGACATGTGGACTGCACAAACCAGAGCCCTACTGTATTGTTAGCCACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002900-1-2,2-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.001
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005512=Laminin_N=PU(15.3=61.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAGAAAAGACAGGCAGCT
R:
ACACTCGGGTGCCCCATAG
Band lengths:
111-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: