MmuALTD0007635-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000002900 | Lamb1
Description
laminin B1 [Source:MGI Symbol;Acc:MGI:96743]
Coordinates
chr12:31265480-31266866:+
Coord C1 exon
chr12:31265480-31265579
Coord A exon
chr12:31265580-31265601
Coord C2 exon
chr12:31266691-31266866
Length
22 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACT
5' ss Score
6.43
3' ss Seq
GTTGCTTTTCTTTTCTGTAGCCC
3' ss Score
8.35
Exon sequences
Seq C1 exon
AAAGGAAGACCCGAAGAAAAGACAGGCAGCTTGCCTGCTGCGTCCTCCTTCCCGTGCCGCGTCCCCTCGTCTGCGAGGACTGGACATGGGGCTGCTCCAG
Seq A exon
GTGTTCGCCTTTGGTGTCCTAG
Seq C2 exon
CCCTATGGGGCACCCGAGTGTGCGCTCAGGAACCGGAGTTCAGCTATGGCTGCGCAGAAGGCAGCTGCTACCCTGCCACTGGCGACCTTCTCATCGGCCGAGCGCAAAAGCTCTCCGTGACTTCGACATGTGGACTGCACAAACCAGAGCCCTACTGTATTGTTAGCCACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002900-1-1,2-1,3-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=NA C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005512=Laminin_N=PU(15.3=61.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAGAAAAGACAGGCAGCT
R:
ACACTCGGGTGCCCCATAG
Band lengths:
111-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types