MmuALTD0007637-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000052911 | Lamb2
Description
laminin, beta 2 [Source:MGI Symbol;Acc:MGI:99916]
Coordinates
chr9:108479881-108480143:+
Coord C1 exon
chr9:108479881-108479914
Coord A exon
chr9:108479915-108479969
Coord C2 exon
chr9:108480058-108480143
Length
55 bp
Sequences
Splice sites
5' ss Seq
ACGGTCGGG
5' ss Score
1.09
3' ss Seq
TCTATTTTACTTTTCTTCAGGAT
3' ss Score
10.04
Exon sequences
Seq C1 exon
AGAGTCTCTCAGATTGTGGAGGAGTGACTGCTAG
Seq A exon
GTCCGACCCTGGACAGATTGAGGGCCTGGAGGGACACCAGCCCAGTACCCACACG
Seq C2 exon
GATGGAGTGGGCCTCAGGAGAACCAGGGAGGGGCAGGCAGGGACAGCCTTTGCCATGGGAACTTCGCTTGGGCCTACTTCTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052911-1-5,2-5,3-5-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=NA C2=0.504
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCTCAGATTGTGGAGGAGT
R:
CACTTAGAAGTAGGCCCAAGCG
Band lengths:
118-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types