MmuALTD0007637-3/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000052911 | Lamb2
Description
laminin, beta 2 [Source:MGI Symbol;Acc:MGI:99916]
Coordinates
chr9:108382145-108382474:+
Coord C1 exon
chr9:108382145-108382245
Coord A exon
chr9:108382246-108382305
Coord C2 exon
chr9:108382389-108382474
Length
60 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGC
5' ss Score
4.14
3' ss Seq
TCTATTTTACTTTTCTTCAGGAT
3' ss Score
10.04
Exon sequences
Seq C1 exon
ATCCTATTTTAGATCCACTCCGTGTTTTACTTCCTTCCCTTGCTTTCCAACTTTACTCAAAGTCGTCAGAGTCTCTCAGATTGTGGAGGAGTGACTGCTAG
Seq A exon
GTCCGACCCTGGACAGATTGAGGGCCTGGAGGGACACCAGCCCAGTACCCACACGGTCGG
Seq C2 exon
GATGGAGTGGGCCTCAGGAGAACCAGGGAGGGGCAGGCAGGGACAGCCTTTGCCATGGGAACTTCGCTTGGGCCTACTTCTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052911-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.483
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCCCTTGCTTTCCAACT
R:
AAGCGAAGTTCCCATGGCAAA
Band lengths:
139-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: