MmuALTD0007644-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026479 | Lamc2
Description
laminin, gamma 2 [Source:MGI Symbol;Acc:MGI:99913]
Coordinates
chr1:154977166-154977929:-
Coord C1 exon
chr1:154977780-154977929
Coord A exon
NA
Coord C2 exon
chr1:154977166-154977280
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TGATCTTGTTCTATTTACAGACT
3' ss Score
8.49
Exon sequences
Seq C1 exon
GTGGAAGCAAAGAGGATCAGACAAAAGGCTGATTCTCTCTCAAACCTGGTGACCAGACAAACGGATGCATTCACGCGTGTGCGAAACAATCTGGGGAACTGGGAAAAAGAAACACGGCAGCTTTTACAGACTGGAAAGGATAGGAGACAG
Seq A exon
NA
Seq C2 exon
ACTTCAGATCAGCTGCTTTCCCGTGCCAACCTTGCTAAAAACAGAGCCCAAGAAGCGCTAAGTATGGGCAATGCCACTTTTTATGAAGTTGAGAACATCCTGAAGAACCTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026479-19-19,20-19-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGCAAAGAGGATCAGACA
R:
CTCGGAGGTTCTTCAGGATGT
Band lengths:
265-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: