MmuALTD0007644-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026479 | Lamc2
Description
laminin, gamma 2 [Source:MGI Symbol;Acc:MGI:99913]
Coordinates
chr1:153130036-153130799:-
Coord C1 exon
chr1:153130650-153130799
Coord A exon
chr1:153130248-153130649
Coord C2 exon
chr1:153130036-153130150
Length
402 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TGATCTTGTTCTATTTACAGACT
3' ss Score
8.49
Exon sequences
Seq C1 exon
GTGGAAGCAAAGAGGATCAGACAAAAGGCTGATTCTCTCTCAAACCTGGTGACCAGACAAACGGATGCATTCACGCGTGTGCGAAACAATCTGGGGAACTGGGAAAAAGAAACACGGCAGCTTTTACAGACTGGAAAGGATAGGAGACAG
Seq A exon
GTACCTTCTGTCAACCGCTCGCTCAGCCAATAAGCAAGCACGCACTGAATGCCGACTGTATGGGTGGAAATAGCCAGAGCCACAACCATAAACCCTCCAAAGGTCATGATGCCACTGGTTACAGAGGGAGTAACCAAGACTGGAATTTTGATGGAATTAACCCCACCCATTGAGTCAGCATTTGAACCTAGGAAGAGAACCCAGGTCTTGTAGGTCTCATTTTAGTCCAAGTCTGTCTATCTTAGATTCAGGAACTAGCTAGTGTTTAAGATTGTGATTTGCAAAACTATTCCTGCCCCTTAGGGTGGAAAGAGTTGTAGACTTTCCTCTAAAAGACATATATTACAAAGTTTGTTCCTGATCAGATACTAGAGGGCTCTGCTCCAGCACCCCTAGACTGCG
Seq C2 exon
ACTTCAGATCAGCTGCTTTCCCGTGCCAACCTTGCTAAAAACAGAGCCCAAGAAGCGCTAAGTATGGGCAATGCCACTTTTTATGAAGTTGAGAACATCCTGAAGAACCTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026479-29-23,30-23-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGCAAAGAGGATCAGACA
R:
CTCGGAGGTTCTTCAGGATGT
Band lengths:
265-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types