MmuALTD0007705-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000062061 | Obp2a
Description
odorant binding protein 2A [Source:MGI Symbol;Acc:MGI:2387617]
Coordinates
chr2:25701562-25702278:+
Coord C1 exon
chr2:25701562-25701675
Coord A exon
chr2:25701676-25702059
Coord C2 exon
chr2:25702177-25702278
Length
384 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
ACCTGCCCCCCTCCTCACAGGGA
3' ss Score
11.31
Exon sequences
Seq C1 exon
TTCATAACACGAAGGTTATTCATGTGGAAAAGACGTCGGTGAATGAGCACTACATTTTCTACTGCGAAGGCCGGCACAATGGGACGTCGTCATTCGGGATGGGAAAGCTCATGG
Seq A exon
GTGAGGTGCCATGGAAGCCCCATGTCCCGTCCCTGGTCTCTACTTCTGGTAGCCACGAGAAGGGCAGGAGATGGGCCTGGCACTGGTGCTGCCCAGGAAATGTGTGAGATCCAAAGTGGAAAATGGGGAAAACTGCTTAGGAATGGGGTTTGTGTGGCCTTTGGAGGCCTGAGTGCTCAGGAGTGGGTCCCACACCTGGAGCCAGCAAATGCTACTCCCAGGGCTCTCAGTCACGTGAACATAAAAGGACGTCTTGGCAGGGACATTTTATTGTAGGTAAGAACCCTCCAGGGCCGGGGACAGCCTCATGACCTTGAGATTCAGTGTTCATATAGGGCTGTGTGGCAACCCCGCAGGTCTGCTTGGGTCTGAGGACGTCCACAG
Seq C2 exon
GGAGAGACTCTGGTGAAAATCCAGAGGCCATGGAAGAATTTAAGAATTTCATAAAGCGCATGAATCTCCGACTGGAAAACATGTTTGTGCCAGAGATCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062061-4-3,5-3,6-3-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(27.1=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(24.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAACACGAAGGTTATTCATGTGGA
R:
CTCCGATCTCTGGCACAAACA
Band lengths:
214-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types