MmuALTD0008272-1/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:126724683-126725865:-
Coord C1 exon
chr10:126725765-126725865
Coord A exon
NA
Coord C2 exon
chr10:126724683-126724746
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TCTCTTTCCTTGTATTGCAGGTG
3' ss Score
11.61
Exon sequences
Seq C1 exon
GTACCGGAGGCTCGGGCTCCACCGACCCACCTCCCACCCCCTCCCACTCACCCTCTGGGCCGCGACTGCGCAGGGCGGGGCCAGCCGAACCATGGGCCGCG
Seq A exon
NA
Seq C2 exon
GTGTGGGCTAAGCTGGTGGCCCCGGCTTTAGACTGGATCCCACAATGTTTGCAGAGATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.425
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0142914=MBD=PU(32.9=57.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: