MmuALTD0008979-2/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155439169-155439931:+
Coord C1 exon
chr2:155439169-155439312
Coord A exon
chr2:155439313-155439471
Coord C2 exon
chr2:155439775-155439931
Length
159 bp
Sequences
Splice sites
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
3' ss Seq
TGTGAACTCTCTCTCTTCAGACA
3' ss Score
9.34
Exon sequences
Seq C1 exon
GTGCTGACAGTGCGTGAAACGGAGATGCAACCCATGAACCCACCCCGTTTCGACTTACTGGAGGACATGGCCATGATGACGCACCTCAACGAGGCTGCAGTGCTGCATAACCTGCGGCAGCGCTATGCTCGCTGGATGATCTAC
Seq A exon
GTGAGCCCTGGGCAGGGACGGCTCAGTGGTGGGCGGGGCCACTAATGGGGCGGGTCTAAGGGAAGAATCGTGACTAGGAGTGGCTAGGCTAGAAGAGGGCTCTGAGACTGAAGGAGCAGAACCGAAGAGTGGCAAAGGAGAGGGCTAGAGGGACAAACT
Seq C2 exon
ACATACTCGGGCCTCTTCTGTGTCACCATTAACCCATACAAATGGCTCCCGGTCTACACAGCTGCTGTGGTGGCTGCCTACAAGGGCAAGCGTCGCTCCGAGGCCCCACCTCATATATATGCAGTGGCAGATAATGCCTACAACGACATGCTCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-3-3,4-3,5-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.3=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCCGTTTCGACTTACTGG
R:
GGAGCATGTCGTTGTAGGCAT
Band lengths:
258-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: