MmuALTD0008979-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155613433-155614195:+
Coord C1 exon
chr2:155613433-155613576
Coord A exon
chr2:155613577-155613735
Coord C2 exon
chr2:155614039-155614195
Length
159 bp
Sequences
Splice sites
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
3' ss Seq
TGTGAACTCTCTCTCTTCAGACA
3' ss Score
9.34
Exon sequences
Seq C1 exon
GTGCTGACAGTGCGTGAAACGGAGATGCAACCCATGAACCCACCCCGTTTCGACTTACTGGAGGACATGGCCATGATGACGCACCTCAACGAGGCTGCAGTGCTGCATAACCTGCGGCAGCGCTATGCTCGCTGGATGATCTAC
Seq A exon
GTGAGCCCTGGGCAGGGACGGCTCAGTGGTGGGCGGGGCCACTAATGGGGCGGGTCTAAGGGAAGAATCGTGACTAGGAGTGGCTAGGCTAGAAGAGGGCTCTGAGACTGAAGGAGCAGAACCGAAGAGTGGCAAAGGAGAGGGCTAGAGGGACAAACT
Seq C2 exon
ACATACTCGGGCCTCTTCTGTGTCACCATTAACCCATACAAATGGCTCCCGGTCTACACAGCTGCTGTGGTGGCTGCCTACAAGGGCAAGCGTCGCTCCGAGGCCCCACCTCATATATATGCAGTGGCAGATAATGCCTACAACGACATGCTCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-4-3,5-3,6-3,7-3-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.3=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCCGTTTCGACTTACTGG
R:
GGAGCATGTCGTTGTAGGCAT
Band lengths:
258-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types