MmuALTD0009397-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121742640-121744144:+
Coord C1 exon
chr9:121742640-121742773
Coord A exon
chr9:121742774-121742787
Coord C2 exon
chr9:121743989-121744144
Length
14 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GGTGACTTGATTTATTTTAGTTA
3' ss Score
4.77
Exon sequences
Seq C1 exon
AGTCCTCCTCAGAGAGTGAAGTTGAGCGAGAGACAATCAGAAGGAGAAGACATAAGAGGAGGCCAAAAGTCAGACATGCTAAAAAGAGACGGAAAGAAATGAGCAGTTCAGAAGAACCGAGGAGGAAGCGCACA
Seq A exon
GTAAGCCCTGAAGG
Seq C2 exon
TTATTCTGAGAGGAGTGATGTGAATGAAAAAAGATCAGTTGACTCAAACACTAAAAGAGAAAAGCCTGTTGTCCGCCCAGAAGAGATTCCTCCAGTTCCCGAGAACCGATTTTTACTTAGAAGAGATATGCCTGCTATCACTGTGGAGCCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-33-28,34-28,35-28,36-28-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF105004=SR-25=FE(55.2=100)
A:
NA
C2:
PF105004=SR-25=PD(23.9=60.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGAACCGAGGAGGAAGC
R:
GCGGACAACAGGCTTTTCTCT
Band lengths:
102-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types