MmuALTD0009401-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000044186 | Nkx2-6
Description
NK2 transcription factor related, locus 6 (Drosophila) [Source:MGI Symbol;Acc:MGI:97351]
Coordinates
chr14:69790005-69793596:+
Coord C1 exon
chr14:69790005-69790105
Coord A exon
NA
Coord C2 exon
chr14:69792689-69793596
Length
0 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TTCCTTCCATGTGACTTTAGAAA
3' ss Score
6.45
Exon sequences
Seq C1 exon
ATCCGGATGGTTTGAGAGCAGCGACAGGGCACAAGCAGTCCCTTTTCGGTGCACCTGGGAGACAGTCCTGGAGATGGGCTCGAATCCTGTGGGGGAGCCAC
Seq A exon
NA
Seq C2 exon
AAACTCCTCCGGGCACGATCTCCCGACTTGGAGCCAGGAACCCAATGACCGATCGCGGCGTGGGCAACCTGAGTGGCGACATGCGCCGAGGCGGTCCGGTTTCAACCAGAACGCGGCCACAGCGGAAGTCCCGCGTGCTATTCTCCCAGGCCCAAGTGCTGGCCCTGGAGCGGCGCTTCAAGCAGCAGCGATACCTGACTGCGCCCGAGCGTGAGCACTTGGCCAGCGCGCTGCAGCTCACGTCCACGCAGGTCAAGATCTGGTTCCAAAACCGGCGCTACAAGTCCAAGAGTCAGCGCCAGGACCAGACTCTGGAACTGGCCGGCCACCCGTTAGCACCGCGCCGGGTAGCAGTGCCAGTACTGGTACTGGACGGCAAGCCCTGCCTGGATCCCGACGTAGCCGCATTCCTGGGTCCCTACAAAGCCACCTCGCCCTATTCCTGCTTCGGTGGCTACGCGGGCACTCCCTACGACGCTAGCTATGCGAGCCGCTGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044186-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.511
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=27.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACAGTCCTGGAGATGGG
R:
CGATCGGTCATTGGGTTCCTG
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: