MmuALTD0009484-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000015468 | Notch4
Description
Notch gene homolog 4 (Drosophila) [Source:MGI Symbol;Acc:MGI:107471]
Coordinates
chr17:34721726-34722074:+
Coord C1 exon
chr17:34721726-34721795
Coord A exon
NA
Coord C2 exon
chr17:34721936-34722074
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
GTCCTTGCTCTTGCCCCAAGGCT
3' ss Score
6.87
Exon sequences
Seq C1 exon
GGCACTGAAGCCAGAGGCCGAAGTGGATGAGGATGGAGTGGCCATGTGCTCGGGCCCTGAAGAGGGAGAG
Seq A exon
NA
Seq C2 exon
GCTGAAGAAACAGCCTCAGCCTCCAGGTGCCAGCTTTGGCCGCTCAACAGCGGCTGTGGAGAGCTCCCCCAGGCAGCCATGCTGACCCCTCCTCAGGAGTGTGAATCGGAGGTTCTGGATGTGGACACCTGTGGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015468-29-29,30-29-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.617
Domain overlap (PFAM):
C1:
PF076847=NODP=PD(2.3=33.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCGAAGTGGATGAGGAT
R:
CAAAGCTGGCACCTGGAGG
Band lengths:
95-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: