MmuALTD0009816-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76514070-76524144:+
Coord C1 exon
chr2:76514070-76514156
Coord A exon
chr2:76514157-76514244
Coord C2 exon
chr2:76523889-76524144
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCTGTTTGTTCTGTTTTAAGGTG
3' ss Score
10.63
Exon sequences
Seq C1 exon
TGCCTCAAGATCTCGATCAAAAGGACGTCCCTTGTCAAGATCCAGGTCAGACACCAGAGTCCTCCAGCCTCAAGATCTGGATCACAG
Seq A exon
GTGAGCCCTCCATTTCTGGATTGTGGTTCATTCCAGACGTAGTCAAGTTGACAACCAGGAACAGCCTTCACACGCTCCTTTCAAAGAG
Seq C2 exon
GTGGTTTGGACTCGTCAGCAGTGGCCTGAGTTTTCCTAGTCCAGTCTGATCCGAGGGAGATGGACTAAAGCCACAGATTGTCTGCTTCTCTGTCTGTGAATTGCAAGGAGGATTGGGATGGTCTTCCGTGCACATCCCTAGACTAATTGCAGCAATGAGTTCAGACGAGAAGGGCATATCCCCTGCTCATAAAACATCCACTCCGACCCATAGAAGTGCCTCGTCTTCAACATCTTCTCAGAGGGAAAGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359-17-16,18-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGCCTCAAGATCTGGA
R:
AGTCTAGGGATGTGCACGGAA
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types