MmuALTD0010064-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000006007 | Pdc
Description
phosducin [Source:MGI Symbol;Acc:MGI:98090]
Coordinates
chr1:152166518-152175530:+
Coord C1 exon
chr1:152166518-152166618
Coord A exon
chr1:152166619-152166630
Coord C2 exon
chr1:152175446-152175530
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
GGTTCTTTTTCATCATACAGACT
3' ss Score
6.06
Exon sequences
Seq C1 exon
AAATCTGAGCTTAACACTGGTCCAAGTTCAAAGGAGTTCAGTGGACAGCGATTCTCACTCCCTGGACATATTCTAGAACACCAGGAACAGAGACCCAAACT
Seq A exon
GTGAGTCTACAA
Seq C2 exon
ACTACACCAAACCCAACCCATAAAATGGAAGAAGCCGCCAGCCAAAGCTTAGAAGAAGATTTTGAAGGACAGGCCACGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006007-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0211411=Phosducin=PU(8.2=95.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAGGAACAGAGACCCAA
R:
GCGTGGCCTGTCCTTCAAAAT
Band lengths:
103-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: