MmuALTD0010064-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000006007 | Pdc
Description
phosducin [Source:MGI Symbol;Acc:MGI:98090]
Coordinates
chr1:150319388-150328400:+
Coord C1 exon
chr1:150319388-150319488
Coord A exon
chr1:150319489-150319500
Coord C2 exon
chr1:150328316-150328400
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
GGTTCTTTTTCATCATACAGACT
3' ss Score
6.06
Exon sequences
Seq C1 exon
AAATCTGAGCTTAACACTGGTCCAAGTTCAAAGGAGTTCAGTGGACAGCGATTCTCACTCCCTGGACATATTCTAGAACACCAGGAACAGAGACCCAAACT
Seq A exon
GTGAGTCTACAA
Seq C2 exon
ACTACACCAAACCCAACCCATAAAATGGAAGAAGCCGCCAGCCAAAGCTTAGAAGAAGATTTTGAAGGACAGGCCACGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006007-0-1,1-1,2-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0211411=Phosducin=PU(25.3=95.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAGGAACAGAGACCCAA
R:
GCGTGGCCTGTCCTTCAAAAT
Band lengths:
103-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types