MmuALTD0010121-1/4 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000006494 | Pdk1
Description
pyruvate dehydrogenase kinase, isoenzyme 1 [Source:MGI Symbol;Acc:MGI:1926119]
Coordinates
chr2:71711800-71713604:+
Coord C1 exon
chr2:71711800-71711875
Coord A exon
NA
Coord C2 exon
chr2:71713463-71713604
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCGC
5' ss Score
6.17
3' ss Seq
GTCACTGTGCTTGGTTTCAGGGT
3' ss Score
9.09
Exon sequences
Seq C1 exon
AAAAAAAAAAAAAACTACAAACCCAAAAAAACAAAGCAGGGGGCCCGCGGCTGCAGCCTTCCGCGCACGTGCGTAG
Seq A exon
NA
Seq C2 exon
GGTCAGTGAATGCTTGTGAAAAGACCTCGTTTATGTTTCTGCGACAAGAGTTGCCTGTTAGATTGGCAAATATAATGAAAGAAATCAGCCTCCTCCCCGACAATCTTCTCAGGACCCCATCCGTACAGCTGGTGCAAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006494-1-2,2-2,3-2,4-2-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF104364=BCDHK_Adom3=FE(28.5=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACAAAGCAGGGGGCCC
R:
CTTTGCACCAGCTGTACGGAT
Band lengths:
189-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: