MmuALTD0010299-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000027088 | Phospho2
Description
phosphatase, orphan 2 [Source:MGI Symbol;Acc:MGI:1920623]
Coordinates
chr2:69789804-69790321:+
Coord C1 exon
chr2:69789804-69789904
Coord A exon
NA
Coord C2 exon
chr2:69790286-69790321
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
3' ss Seq
GTTGTGCTATCTCTCCTCAGGTT
3' ss Score
10.89
Exon sequences
Seq C1 exon
CTGCCGCTTTTCTCACTCGCTGCGCTAGTTTGGAACCGGCCGGTGTGCGAGTCGAGGCCCAGGCTGGGTGCGAGCTTCTACTCTGCGCCCCGCTGGCTGAG
Seq A exon
NA
Seq C2 exon
GTTTTCTATCAGAGATGTTCCACTGTAATAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027088-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTTTTCTCACTCGCT
R:
GCATTATTACAGTGGAACATCTCTGA
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types