MmuALTD0010353-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000030660 | Pik3c2a
Description
phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide [Source:MGI Symbol;Acc:MGI:1203729]
Coordinates
chr7:123549374-123561127:-
Coord C1 exon
chr7:123561066-123561127
Coord A exon
chr7:123560967-123561065
Coord C2 exon
chr7:123549374-123549477
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
AACCACTTTTTTGATTACAGAAA
3' ss Score
5.31
Exon sequences
Seq C1 exon
AGGATCCTTGGGATGCTGTTCTTCTTGAAGAGAGATCGCCAAGTTGTCACCTAGAAAGAAAG
Seq A exon
GTGAATGGAAAATCCCTTTCTGGGGCAACTGTAACAAGAAGCCAGTCTTTAATCATTCGGACAGCTCAATTTACAAAAGCCCAGGGCCAAGTATCTCAG
Seq C2 exon
AAAGACCCAAATGGGACCAGTAGTTTGCCAACTGGAAGTTCTCTTCTACAAGAATTTGAAGTACAGAATGACGAGGTGGCAGCTTTTTGTCAATCCATTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030660-5-6,6-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTTGGGATGCTGTTCT
R:
ATGGATTGACAAAAAGCTGCCAC
Band lengths:
159-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: